[ 源代码： optimir ]
软件包：optimir（1.0-3）
Integrating genetic variations in miRNA alignment
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.
OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression.
其他与 optimir 有关的软件包
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cutadapt
- Clean biological sequences from high-throughput sequencing reads
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- rec: r-cran-gridextra
- GNU R package with extensions for the grid package