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[ 源代码: jellyfish  ]

软件包:libjellyfish-perl(2.3.0-10)

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count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

标签: 软件开发: Perl 开发, 函数库, 实做语言: implemented-in::c, implemented-in::perl, 角色: 开发用函数库

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硬件架构 软件包大小 安装后大小 文件
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i386 63.1 kB184.0 kB [文件列表]
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