[ 源代码： r-bioc-grohmm ]
软件包：r-bioc-grohmm（1.24.0-1）
r-bioc-grohmm 的相关链接
Debian 的资源：
下载源码包 r-bioc-grohmm：
- [r-bioc-grohmm_1.24.0-1.dsc]
- [r-bioc-grohmm_1.24.0.orig.tar.gz]
- [r-bioc-grohmm_1.24.0-1.debian.tar.xz]
维护小组：
外部的资源：
- 主页 [bioconductor.org]
相似软件包：
GRO-seq Analysis Pipeline
This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).
The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.
其他与 r-bioc-grohmm 有关的软件包
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- dep: libc6 (>= 2.14) [amd64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [除 amd64, arm64, ppc64el]
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- dep: r-api-4.0
- 本虚包由这些包填实： r-base-core
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- dep: r-api-bioc-3.12
- 本虚包由这些包填实： r-bioc-biocgenerics
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- dep: r-base-core (>= 4.0.3-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicalignments (>= 1.15.6)
- BioConductor representation and manipulation of short genomic alignments
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- dep: r-bioc-genomicranges (>= 1.31.8)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.13.12)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rtracklayer (>= 1.39.7)
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-s4vectors (>= 0.17.25)
- BioConductor S4 implementation of vectors and lists
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- dep: r-cran-mass
- GNU R package of Venables and Ripley's MASS
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-edger
- Empirical analysis of digital gene expression data in R
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-org.hs.eg.db
- genome-wide annotation for Human
下载 r-bioc-grohmm
| 硬件架构 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|
| amd64 | 4,332.7 kB | 4,503.0 kB | [文件列表] |
| arm64 | 4,330.2 kB | 4,491.0 kB | [文件列表] |
| armel | 4,330.7 kB | 4,494.0 kB | [文件列表] |
| armhf | 4,328.2 kB | 4,478.0 kB | [文件列表] |
| i386 | 4,333.7 kB | 4,502.0 kB | [文件列表] |
| mips64el | 4,330.3 kB | 4,498.0 kB | [文件列表] |
| mipsel | 4,330.4 kB | 4,497.0 kB | [文件列表] |
| ppc64el | 4,335.6 kB | 4,511.0 kB | [文件列表] |
| s390x | 4,330.9 kB | 4,499.0 kB | [文件列表] |