[ 源代码： prime-phylo ]
软件包：prime-phylo（1.0.11-10）
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
其他与 prime-phylo 有关的软件包
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- 或者 libblas.so.3
- 本虚包由这些包填实： libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libboost-mpi1.74.0 (>= 1.74.0)
- C++ interface to the Message Passing Interface (MPI)
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- dep: libboost-serialization1.74.0 (>= 1.74.0)
- serialization library for C++
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- dep: libc6 (>= 2.29)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64, i386, mipsel, s390x]
- GCC 支持库
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.5) [arm64, mips64el]
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- 或者 liblapack.so.3
- 本虚包由这些包填实： libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libopenmpi3 (>= 4.1.0)
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 9)
- GNU 标准 C++ 库，第3版
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- dep: libxml2 (>= 2.7.4)
- GNOME XML 库
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- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mrbayes
- Bayesian Inference of Phylogeny
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- sug: muscle
- Multiple alignment program of protein sequences
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- sug: njplot
- phylogenetic tree drawing program
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
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- sug: python3-biopython
- Python3 library for bioinformatics
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- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- sug: treeviewx
- Displays and prints phylogenetic trees
下载 prime-phylo
| 硬件架构 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|
| amd64 | 806.5 kB | 3,148.0 kB | [文件列表] |
| arm64 | 718.7 kB | 2,956.0 kB | [文件列表] |
| armel | 677.1 kB | 2,533.0 kB | [文件列表] |
| armhf | 691.6 kB | 2,013.0 kB | [文件列表] |
| i386 | 869.1 kB | 3,137.0 kB | [文件列表] |
| mips64el | 686.7 kB | 3,525.0 kB | [文件列表] |
| mipsel | 691.5 kB | 3,255.0 kB | [文件列表] |
| ppc64el | 812.1 kB | 3,828.0 kB | [文件列表] |
| s390x | 719.0 kB | 3,176.0 kB | [文件列表] |