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[ 源代码: jellyfish  ]

软件包:libjellyfish-2.0-2(2.3.0-15 以及其他的)

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count k-mers in DNA sequences (dynamic library of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the dynamic library the main executable of jellyfish is linked to.

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硬件架构 版本 软件包大小 安装后大小 文件
mips64el 2.3.0-15+b3 58.4 kB232.0 kB [文件列表]