软件包:minimap2(2.24+dfsg-3 以及其他的)
versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.
其他与 minimap2 有关的软件包
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- dep: libc6 (>= 2.34)
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6-udeb
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
下载 minimap2
硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
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amd64 | 2.24+dfsg-3+b1 | 377.2 kB | 498.0 kB | [文件列表] |
arm64 | 2.24+dfsg-3+b1 | 369.0 kB | 510.0 kB | [文件列表] |
armel | 2.24+dfsg-3+b1 | 386.7 kB | 545.0 kB | [文件列表] |
armhf | 2.24+dfsg-3+b1 | 388.1 kB | 477.0 kB | [文件列表] |
i386 | 2.24+dfsg-3+b1 | 384.2 kB | 525.0 kB | [文件列表] |
mips64el | 2.24+dfsg-3+b1 | 402.3 kB | 582.0 kB | [文件列表] |
mipsel | 2.24+dfsg-3+b1 | 412.6 kB | 645.0 kB | [文件列表] |
ppc64el | 2.24+dfsg-3+b1 | 389.0 kB | 574.0 kB | [文件列表] |
s390x | 2.24+dfsg-3+b1 | 389.4 kB | 567.0 kB | [文件列表] |