软件包：fasta3（36.3.8i.14-Nov-2020-1）

fasta3 的相关链接

Debian 的资源：

下载源码包 fasta3：

维护小组：

外部的资源：

主页 [fasta.bioch.virginia.edu]

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tools for searching collections of biological sequences

The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

 * Protein
   - Protein-protein FASTA
   - Protein-protein Smith-Waterman (ssearch)
   - Global Protein-protein (Needleman-Wunsch) (ggsearch)
   - Global/Local protein-protein (glsearch)
   - Protein-protein with unordered peptides (fasts)
   - Protein-protein with mixed peptide sequences (fastf)

 * Nucleotide
   - Nucleotide-Nucleotide (DNA/RNA fasta)
   - Ordered Nucleotides vs Nucleotide (fastm)
   - Un-ordered Nucleotides vs Nucleotide (fasts)

 * Translated
   - Translated DNA (with frameshifts, e.g. ESTs)
     vs Proteins (fastx/fasty)
   - Protein vs Translated DNA (with frameshifts)
     (tfastx/tfasty)
   - Peptides vs Translated DNA (tfasts)

 * Statistical Significance
   - Protein vs Protein shuffle (prss)
   - DNA vs DNA shuffle (prss)
   - Translated DNA vs Protein shuffle (prfx)

 * Local Duplications
   - Local Protein alignments (lalign)
   - Plot Protein alignment "dot-plot" (plalign)
   - Local DNA alignments (lalign)
   - Plot DNA alignment "dot-plot" (plalign)

This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.

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dep: python3

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rec: r-base-core

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sug: libxml-twig-perl

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sug: ncbi-blast+

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下载 fasta3

下载可用于所有硬件架构的
硬件架构	软件包大小	安装后大小	文件
amd64	902.2 kB	6,970.0 kB	[文件列表]
arm64	805.2 kB	6,702.0 kB	[文件列表]
armel	807.9 kB	6,924.0 kB	[文件列表]
armhf	771.9 kB	5,324.0 kB	[文件列表]
i386	853.3 kB	6,924.0 kB	[文件列表]
mips64el	809.3 kB	6,742.0 kB	[文件列表]
mipsel	801.6 kB	6,609.0 kB	[文件列表]
ppc64el	884.6 kB	8,238.0 kB	[文件列表]
s390x	826.1 kB	6,836.0 kB	[文件列表]