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[ 源代码: bandage  ]

软件包:bandage(0.9.0-2)

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Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly.

标签: 界面工具箱: Qt

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 948.0 kB2,239.0 kB [文件列表]
arm64 877.0 kB2,145.0 kB [文件列表]
armel 850.8 kB2,012.0 kB [文件列表]
armhf 854.4 kB1,628.0 kB [文件列表]
i386 981.9 kB2,287.0 kB [文件列表]
mips64el 897.8 kB2,894.0 kB [文件列表]
mipsel 900.4 kB2,732.0 kB [文件列表]
ppc64el 942.2 kB2,654.0 kB [文件列表]
s390x 878.4 kB2,326.0 kB [文件列表]