Пакунок: gbrowse (2.56+dfsg-12)

Links for gbrowse

Debian Resources:

Download Source Package gbrowse:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Olivier Sallou (QA Page)
Charles Plessy (QA Page)
Aaron M. Ucko (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [gmod.org]

Similar packages:

GMOD Generic Genome Browser

Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). Some of its features:

 * Simultaneous bird's eye and detailed views of the genome;
 * Scroll, zoom, center;
 * Attach arbitrary URLs to any annotation;
 * Order and appearance of tracks are customizable by administrator and
   end-user;
 * Search by annotation ID, name, or comment;
 * Supports third party annotation using GFF formats;
 * Settings persist across sessions;
 * DNA and GFF dumps;
 * Connectivity to different databases, including BioSQL and Chado;
 * Multi-language support;
 * Third-party feature loading;
 * Customizable plug-in architecture (e.g. run BLAST, dump & import many
   formats, find oligonucleotides, design primers, create restriction maps,
   edit features).

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::perl, interface::web, Role: Program, Purpose: Analysing, use::viewing, web::application, World Wide Web: CGI

Інші пакунки пов'язані з gbrowse

depends

recommends

suggests

enhances

dep: apache2

HTTP сервер Apache

or httpd-cgi

virtual package provided by apache2, lighttpd, merecat, mini-httpd, nginx, tntnet, yaws
dep: bioperl

Perl tools for computational molecular biology
dep: libbio-coordinate-perl

BioPerl modules for working with biological coordinates
dep: libbio-db-seqfeature-perl

Normalized feature for use with Bio::DB::SeqFeature::Store
dep: libbio-graphics-perl

Generate GD images of Bio::Seq objects
dep: libcgi-session-perl

Стійкі сесійні дані у застосунках CGI
dep: libdbd-sqlite3-perl

Perl DBI driver with a self-contained RDBMS
dep: libgd-gd2-noxpm-perl

virtual package provided by libgd-perl

or libgd-gd2-perl

virtual package provided by libgd-perl
dep: libhttp-daemon-perl

simple http server class
dep: libio-string-perl

Emulate IO::File interface for in-core strings
dep: libjs-prototype

JavaScript Framework for dynamic web applications
dep: libjs-scriptaculous

JavaScript library for dynamic web applications
dep: libjson-perl

Модуль для обробки відформатованих JSON-даних
dep: libstatistics-descriptive-perl

Perl module for basic descriptive statistical functions
dep: libterm-readkey-perl

perl module for simple terminal control
dep: libvm-ec2-perl

module providing controls on Amazon EC2 and Eucalyptus
dep: libwww-perl

Простий й послідовний програмний інтерфейс до всесвітнього павутиння
dep: perl

Мова Практичного Видобування та Побудування Звітів Лари Уолла (Larry Wall)
dep: sqlite3

Інтерфейс командного рядка для SQLite 3

rec: apache2 (>= 2.4.6-4~)

HTTP сервер Apache

or httpd

virtual package provided by apache2, lighttpd, merecat, micro-httpd, mini-httpd, nginx, tntnet, webfs, yaws

sug: gbrowse-calign

CAlign helper
sug: gbrowse-data

Sample data to use GBrowse
sug: libfile-nfslock-perl

perl module to do NFS (or not) locking

Завантажити gbrowse

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