Пакунок: trnascan-se (2.0.12+ds-1) [non-free]

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Homepage [lowelab.ucsc.edu]

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detection of transfer RNA genes in genomic sequence

tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.

Інші пакунки пов'язані з trnascan-se

depends

recommends

suggests

enhances

dep: infernal

inference of RNA secondary structural alignments
dep: libc6 (>= 2.34)

Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
dep: perl

Мова Практичного Видобування та Побудування Звітів Лари Уолла (Larry Wall)
dep: trnascan-se-common (= 2.0.12+ds-1)

detection of transfer RNA genes in genomic sequence (common files)

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Завантаження для всіх доступних архітектур
Архітектура	Розмір пакунка	Розмір після встановлення	Файли
amd64	154.6 kB	741.0 kB	[список файлів]
arm64	143.7 kB	817.0 kB	[список файлів]
i386	153.9 kB	774.0 kB	[список файлів]