Пакунок: libseqlib2 (1.2.0+dfsg-11 and others)

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C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Tags: Role: Shared Library

Інші пакунки пов'язані з libseqlib2

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recommends

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enhances

dep: libc6 (>= 2.38)

Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
dep: libfml0 (>= 0.1+git20190320.b499514)

library for assembling Illumina short reads in small regions
dep: libgcc-s1 (>= 3.0)

Допоміжна бібліотека GCC
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libjsoncpp26 (>= 1.9.6)

library for reading and writing JSON for C++
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 13.1)

Стандартна бібліотека C++ GNU, версії 3
dep: zlib1g (>= 1:1.1.4)

Бібліотека стискання даних (виконавчий модуль)

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Архітектура	Версія	Розмір пакунка	Розмір після встановлення	Файли
s390x	1.2.0+dfsg-11+b2	157.8 kB	512.0 kB	[список файлів]