[ Source: kmer ]
Пакунок: atac (0~20150903+r2013-9 and others)
Links for atac
Debian Resources:
Download Source Package kmer:
- [kmer_0~20150903+r2013-9.dsc]
- [kmer_0~20150903+r2013.orig.tar.gz]
- [kmer_0~20150903+r2013-9.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [kmer.sourceforge.net]
Similar packages:
genome assembly-to-assembly comparison
atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.
The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.
Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.
This package is part of the Kmer suite.
Інші пакунки пов'язані з atac
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- dep: gnuplot
- Command-line driven interactive plotting program.
also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: leaff
- biological sequence library utilities and applications
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- dep: libc6 (>= 2.38) [not alpha, ia64, sh4]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.39) [sh4]
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- dep: libc6.1 (>= 2.36) [ia64]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.38) [alpha]
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- dep: libfile-which-perl
- Perl module for searching paths for executable programs
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]
- Допоміжна бібліотека GCC
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- Допоміжна бібліотека GCC
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- Допоміжна бібліотека GCC
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- dep: libstdc++6 (>= 5.2)
- Стандартна бібліотека C++ GNU, версії 3
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: meryl
- in- and out-of-core kmer counting and utilities
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- dep: perl
- Мова Практичного Видобування та Побудування Звітів Лари Уолла (Larry Wall)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12) [ia64]
- dep: python3 (<< 3.13) [not ia64]
- dep: python3 (>= 3.11~) [ia64]
- dep: python3 (>= 3.12~) [not ia64]
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- dep: python3.11 [ia64]
- Interactive high-level object-oriented language (version 3.11)
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- dep: python3.12 [not ia64]
- Interactive high-level object-oriented language (version 3.12)
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- rec: kmer-examples
- sample data for kmer suite of tools for DNA sequence analysis
Завантажити atac
| Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|---|
| alpha (unofficial port) | 0~20150903+r2013-9 | 395.7 kB | 3,503.0 kB | [список файлів] |
| amd64 | 0~20150903+r2013-9 | 377.4 kB | 2,788.0 kB | [список файлів] |
| arm64 | 0~20150903+r2013-9 | 357.5 kB | 3,360.0 kB | [список файлів] |
| armel | 0~20150903+r2013-9 | 349.3 kB | 2,514.0 kB | [список файлів] |
| armhf | 0~20150903+r2013-9 | 345.0 kB | 2,102.0 kB | [список файлів] |
| hppa (unofficial port) | 0~20150903+r2013-9 | 463.8 kB | 3,011.0 kB | [список файлів] |
| i386 | 0~20150903+r2013-9 | 401.8 kB | 2,994.0 kB | [список файлів] |
| ia64 (unofficial port) | 0~20150903+r2013-8+b3 | 511.8 kB | 4,444.0 kB | [список файлів] |
| m68k (unofficial port) | 0~20150903+r2013-9 | 406.3 kB | 2,906.0 kB | [список файлів] |
| mips64el | 0~20150903+r2013-9 | 389.9 kB | 3,663.0 kB | [список файлів] |
| ppc64 (unofficial port) | 0~20150903+r2013-9 | 393.2 kB | 3,808.0 kB | [список файлів] |
| ppc64el | 0~20150903+r2013-9 | 405.5 kB | 3,808.0 kB | [список файлів] |
| riscv64 | 0~20150903+r2013-9 | 406.7 kB | 2,460.0 kB | [список файлів] |
| s390x | 0~20150903+r2013-9 | 340.5 kB | 2,739.0 kB | [список файлів] |
| sh4 (unofficial port) | 0~20150903+r2013-9 | 456.1 kB | 3,402.0 kB | [список файлів] |
| sparc64 (unofficial port) | 0~20150903+r2013-9 | 358.2 kB | 23,361.0 kB | [список файлів] |
| x32 (unofficial port) | 0~20150903+r2013-9 | 383.5 kB | 2,730.0 kB | [список файлів] |