[ Source: ragout ]
Пакунок: ragout (2.3-4)
Links for ragout
Debian Resources:
Download Source Package ragout:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
Reference-Assisted Genome Ordering UTility
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).
The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.
Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.
Інші пакунки пов'язані з ragout
|
|
|
|
-
- dep: libc6 (>= 2.34)
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- Допоміжна бібліотека GCC
-
- dep: libstdc++6 (>= 11)
- Стандартна бібліотека C++ GNU, версії 3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
-
- rec: sibelia
- comparative genomics tool
Завантажити ragout
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| s390x | 2,071.7 kB | 9,691.0 kB | [список файлів] |