Paket: r-cran-alakazam (0.2.11-1)

r-cran-alakazam için bağlantılar

Debian Kaynakları:

r-cran-alakazam Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [cran.r-project.org]

Benzer paketler:

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

r-cran-alakazam ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

dep: libc6 (>= 2.17) [arm64]

dep: libc6 (>= 2.4) [armhf, i386]
dep: libgcc1 (>= 1:3.0) [armhf değil]

GCC support library

dep: libgcc1 (>= 1:3.5) [armhf]
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: r-api-3.5

sanal paketi sağlayan r-base-core
dep: r-base-core (>= 3.5.1-1)

GNU R core of statistical computation and graphics system
dep: r-cran-dplyr (>= 0.5.0)

GNU R grammar of data manipulation
dep: r-cran-ggplot2 (>= 2.0.0)

implementation of the Grammar of Graphics
dep: r-cran-igraph (>= 1.0.0)

GNU R network analysis and visualization
dep: r-cran-lazyeval

GNU R lazy (non-standard) evaluation
dep: r-cran-progress

GNU R terminal progress bars
dep: r-cran-rcpp (>= 0.12.12)

GNU R package for Seamless R and C++ Integration
dep: r-cran-readr

GNU R package to read rectangular text data
dep: r-cran-scales

Scale functions for visualization
dep: r-cran-seqinr

GNU R biological sequences retrieval and analysis
dep: r-cran-stringi

GNU R character string processing facilities
dep: r-cran-tidyr

GNU R package to easily tidy data

sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

r-cran-alakazam indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	1.617,1 kB	1.943,0 kB	[dosya listesi]
arm64	1.610,8 kB	1.935,0 kB	[dosya listesi]
armhf	1.614,8 kB	1.902,0 kB	[dosya listesi]
i386	1.622,9 kB	1.957,0 kB	[dosya listesi]