Paket: gubbins (2.3.4-1)

gubbins için bağlantılar

Debian Kaynakları:

gubbins Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [sanger-pathogens.github.io]

Benzer paketler:

phylogenetic analysis of genome sequences

Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.

Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.

gubbins ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

dep: libc6 (>= 2.4) [i386]
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python library for bioinformatics (implemented in Python 3)
dep: python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)
dep: python3-nose

test discovery and running for Python3 unittest
dep: python3-reportlab

ReportLab library to create PDF documents using Python3
dep: raxml (>= 8)

Randomized Axelerated Maximum Likelihood of phylogenetic trees
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

gubbins indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	47,4 kB	187,0 kB	[dosya listesi]
i386	48,3 kB	186,0 kB	[dosya listesi]