[ Källkod: r-bioc-megadepth ]
Paket: r-bioc-megadepth (1.14.0+ds-1)
Länkar för r-bioc-megadepth
Debianresurser:
Hämta källkodspaketet r-bioc-megadepth:
- [r-bioc-megadepth_1.14.0+ds-1.dsc]
- [r-bioc-megadepth_1.14.0+ds.orig.tar.xz]
- [r-bioc-megadepth_1.14.0+ds-1.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [bioconductor.org]
Liknande paket:
BioCOnductor BigWig and BAM related utilities
This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.
Andra paket besläktade med r-bioc-megadepth
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- dep: megadepth
- computes coverage from BigWig and BAM sequencing files
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- dep: r-api-4.0
- virtuellt paket som tillhandahålls av r-base-core
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- dep: r-api-bioc-3.19
- virtuellt paket som tillhandahålls av r-bioc-biocgenerics
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- dep: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
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- dep: r-cran-cmdfun
- GNI R framework for building interfaces to shell commands
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- dep: r-cran-dplyr
- GNU R grammar of data manipulation
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- dep: r-cran-fs
- GNU R cross-platform file system operations
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- dep: r-cran-magrittr
- GNU R forward-pipe operator
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- dep: r-cran-readr
- GNU R package to read rectangular text data
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- dep: r-cran-xfun
- miscellaneous GNU R functions by 'Yihui Xie'
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
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- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- sug: r-cran-covr
- test coverage for GNU R packages
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-sessioninfo
- R Session Information
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- sug: r-cran-testthat
- GNU R testsuite
Hämta r-bioc-megadepth
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| all | 84,2 kbyte | 166,0 kbyte | [filförteckning] |