Paket: pirs (2.0.2+dfsg-12 och andra)

Länkar för pirs

Debianresurser:

Hämta källkodspaketet pirs:

Ansvariga:

Externa resurser:

Hemsida [github.com]

Liknande paket:

Profile based Illumina pair-end Reads Simulator

The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias.

The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated.

The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided.

To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.

Andra paket besläktade med pirs

beror

rekommenderar

föreslår

enhances

dep: fonts-liberation

fonts with the same metrics as Times, Arial and Courier
dep: gnuplot-qt

Command-line driven interactive plotting program. QT-package

eller gnuplot

Command-line driven interactive plotting program.
också ett virtuellt paket som tillhandahålls av gnuplot-nox, gnuplot-qt, gnuplot-x11
dep: libc6 (>= 2.38)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC stödbibliotek
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libgzstream0 (>= 1.5+dfsg)

provide functionality of zlib C-library in a C++ iostream
dep: libstdc++6 (>= 13.1)

GNU standardbibliotek v3 för C++
dep: pirs-profiles

profile basd Illumina pair-end Reads Simulator (profile data)
dep: zlib1g (>= 1:1.2.0.2)

Kompressionsbibliotek - körtidspaket

Hämta pirs

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
arm64	2.0.2+dfsg-12+b1	108,7 kbyte	423,0 kbyte	[filförteckning]