[ Källkod: r-cran-seurat ]
Paket: r-cran-seurat (5.0.1-1 och andra)
Länkar för r-cran-seurat
Debianresurser:
Hämta källkodspaketet r-cran-seurat:
Ansvariga:
Externa resurser:
- Hemsida [cran.r-project.org]
Liknande paket:
Tools for Single Cell Genomics
A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
Andra paket besläktade med r-cran-seurat
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- dep: libc6 (>= 2.32) [ej alpha, ia64]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libc6.1 (>= 2.32) [alpha]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, ia64]
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC stödbibliotek
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- dep: libstdc++6 (>= 11) [x32]
- GNU standardbibliotek v3 för C++
- dep: libstdc++6 (>= 13.1) [ej x32]
-
- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
-
- dep: r-api-4.0
- virtuellt paket som tillhandahålls av r-base-core
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- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
- GNU R core of statistical computation and graphics system
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- dep: r-cran-cluster
- GNU R package for cluster analysis by Rousseeuw et al
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- dep: r-cran-cowplot
- GNU R streamlined plot theme and plot annotations for 'ggplot2'
-
- dep: r-cran-fastdummies [ej x32]
- fast creation of dummy columns and rows from categorical variables
-
- dep: r-cran-fitdistrplus
- support fit of parametric distribution
-
- dep: r-cran-future
- R package: A Future API for R
-
- dep: r-cran-future.apply
- apply function to elements in parallel using futures
-
- dep: r-cran-generics (>= 0.1.3) [ej x32]
- GNU R common S3 generics not provided by base R methods
-
- dep: r-cran-ggplot2 (>= 3.3.0)
- implementation of the Grammar of Graphics
-
- dep: r-cran-ggrepel
- auto-position non-overlapping text labels in plots
-
- dep: r-cran-ggridges
- Ridgeline Plots in 'ggplot2'
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- dep: r-cran-httr
- GNU R tools for working with URLs and HTTP
-
- dep: r-cran-ica
- Independent Component Analysis
-
- dep: r-cran-igraph
- GNU R network analysis and visualization
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- dep: r-cran-irlba
- GNU R fast truncated SVD, PCA and symmetric eigendecomposition
-
- dep: r-cran-jsonlite
- Robust, High Performance JSON Parser and Generator for R
-
- dep: r-cran-kernsmooth
- GNU R package for kernel smoothing and density estimation
-
- dep: r-cran-leiden (>= 0.3.1)
- GNU R implementation of Leiden clustering algorithm
-
- dep: r-cran-lifecycle [ej x32]
- manage the life cycle of your GNU R package functions
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- dep: r-cran-lmtest
- GNU R package for diagnostic checking in linear models
-
- dep: r-cran-mass
- GNU R package of Venables and Ripley's MASS
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- dep: r-cran-matrix (>= 1.5-0)
- GNU R package of classes for dense and sparse matrices
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- dep: r-cran-matrixstats
- GNU R methods that apply to rows and columns of a matrix
-
- dep: r-cran-miniui
- Shiny UI Widgets for Small Screens
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- dep: r-cran-patchwork
- GNU R the composer of plots
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- dep: r-cran-pbapply
- GNU R package providing progress bars for vectorized R functions
-
- dep: r-cran-plotly (>= 4.9.0)
- create interactive web graphics via 'plotly.js' in GNU R
-
- dep: r-cran-png
- GNU R package to read and write PNG images
-
- dep: r-cran-progressr
- GNU R inclusive, unifying API for progress updates
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- dep: r-cran-purrr [ej x32]
- GNU R functional programming tools
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- dep: r-cran-rann
- Fast Nearest Neighbour Search Using L2 Metric
-
- dep: r-cran-rcolorbrewer
- GNU R package providing suitable color palettes
-
- dep: r-cran-rcpp (>= 1.0.7)
- GNU R package for Seamless R and C++ Integration
-
- dep: r-cran-rcppannoy (>= 0.0.18)
- Rcpp bindings for Annoy (approximate nearest neighbors)
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- dep: r-cran-rcppeigen
- GNU R package for Eigen templated linear algebra
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- dep: r-cran-rcpphnsw [ej x32]
- R bindings for a Library for Approximate Nearest Neighbors
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- dep: r-cran-rcppprogress
- interruptible progress bar for C++ in GNU R packages
-
- dep: r-cran-reticulate
- R interface to Python modules, classes, and functions
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- dep: r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
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- dep: r-cran-rocr
- GNU R package to prepare and display ROC curves
-
- dep: r-cran-rspectra [ej x32]
- GNU R solvers for large-scale eigenvalue and SVD problems
-
- dep: r-cran-rtsne
- GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
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- dep: r-cran-scales
- Scale functions for visualization
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- dep: r-cran-scattermore (>= 0.7) [x32]
- GNU R scatterplots with more points
- dep: r-cran-scattermore (>= 1.2) [ej x32]
-
- dep: r-cran-sctransform (>= 0.3.5) [x32]
- Variance Stabilizing Transformations for Single Cell UMI Data
- dep: r-cran-sctransform (>= 0.4.1) [ej x32]
-
- dep: r-cran-seuratobject (>= 4.1.3) [x32]
- GNU R data structures for single cell data
- dep: r-cran-seuratobject (>= 5.0.0) [ej x32]
-
- dep: r-cran-shiny
- GNU R web application framework
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- dep: r-cran-spatstat.explore
- GNU R exploratory data analysis for the 'spatstat' family
-
- dep: r-cran-spatstat.geom
- GNU R geometrical functionality of the 'spatstat' package
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- dep: r-cran-tibble
- GNU R Simple Data Frames
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- dep: r-cran-uwot (>= 0.1.10) [ej x32]
- GNU R uniform manifold approximation and projection (UMAP)
- dep: r-cran-uwot (>= 0.1.14) [x32]
-
- rec: r-bioc-biobase [ej x32]
- base functions for Bioconductor
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- rec: r-bioc-biocgenerics [ej x32]
- generic functions for Bioconductor
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- rec: r-bioc-delayedarray [ej x32]
- BioConductor delayed operations on array-like objects
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- rec: r-bioc-deseq2 [ej x32]
- R package for RNA-Seq Differential Expression Analysis
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- rec: r-bioc-genomeinfodb [ej x32]
- BioConductor utilities for manipulating chromosome identifiers
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- rec: r-bioc-genomicranges [ej x32]
- BioConductor representation and manipulation of genomic intervals
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- rec: r-bioc-iranges [ej x32]
- GNU R low-level containers for storing sets of integer ranges
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- rec: r-bioc-limma [ej x32]
- linear models for microarray data
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- rec: r-bioc-monocle [ej x32]
- clustering, differential expression, and trajectory analysis for RNA-Seq
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- rec: r-bioc-rtracklayer [ej x32]
- GNU R interface to genome browsers and their annotation tracks
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- rec: r-bioc-s4vectors [ej x32]
- BioConductor S4 implementation of vectors and lists
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- rec: r-bioc-singlecellexperiment [ej x32]
- S4 Classes for Single Cell Data
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- rec: r-bioc-summarizedexperiment [ej x32]
- BioConductor assay container
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- rec: r-cran-ape [ej x32]
- GNU R package for Analyses of Phylogenetics and Evolution
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- rec: r-cran-data.table [ej x32]
- GNU R extension of Data.frame
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- rec: r-cran-ggrastr [ej x32]
- Bioconductor rasterize layers for 'ggplot2'
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- rec: r-cran-hdf5r
- GNU R interface to the 'HDF5' binary data format
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- rec: r-cran-metap [ej x32]
- Meta-Analysis of Significance Values
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- rec: r-cran-mixtools [ej x32]
- GNU R tools for analyzing finite mixture models
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- rec: r-cran-r.utils [ej x32]
- GNU R various programming utilities
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- rec: r-cran-rsvd [ej x32]
- Randomized Singular Value Decomposition
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- rec: r-cran-testthat
- GNU R testsuite
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- rec: r-cran-vgam [ej x32]
- GNU R package for estimating vector generalized additive models
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- sug: r-bioc-biobase
- base functions for Bioconductor
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- sug: r-bioc-biocgenerics
- generic functions for Bioconductor
-
- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
-
- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
-
- sug: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
-
- sug: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
-
- sug: r-bioc-limma
- linear models for microarray data
-
- sug: r-bioc-monocle
- clustering, differential expression, and trajectory analysis for RNA-Seq
-
- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- sug: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
-
- sug: r-bioc-singlecellexperiment
- S4 Classes for Single Cell Data
-
- sug: r-bioc-summarizedexperiment
- BioConductor assay container
-
- sug: r-cran-ape
- GNU R package for Analyses of Phylogenetics and Evolution
-
- sug: r-cran-data.table
- GNU R extension of Data.frame
-
- sug: r-cran-ggrastr
- Bioconductor rasterize layers for 'ggplot2'
-
- sug: r-cran-metap
- Meta-Analysis of Significance Values
-
- sug: r-cran-mixtools
- GNU R tools for analyzing finite mixture models
-
- sug: r-cran-r.utils
- GNU R various programming utilities
-
- sug: r-cran-rsvd
- Randomized Singular Value Decomposition
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- sug: r-cran-vgam
- GNU R package for estimating vector generalized additive models
Hämta r-cran-seurat
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| alpha (inofficiell anpassning) | 5.0.1-1 | 3.448,8 kbyte | 4.137,0 kbyte | [filförteckning] |
| amd64 | 5.0.1-1 | 3.477,7 kbyte | 4.094,0 kbyte | [filförteckning] |
| arm64 | 5.0.1-1 | 3.456,9 kbyte | 4.074,0 kbyte | [filförteckning] |
| armel | 5.0.1-1 | 3.452,9 kbyte | 4.033,0 kbyte | [filförteckning] |
| armhf | 5.0.1-1 | 3.451,9 kbyte | 3.937,0 kbyte | [filförteckning] |
| hppa (inofficiell anpassning) | 5.0.1-1 | 3.461,9 kbyte | 4.112,0 kbyte | [filförteckning] |
| i386 | 5.0.1-1 | 3.484,6 kbyte | 4.104,0 kbyte | [filförteckning] |
| ia64 (inofficiell anpassning) | 5.0.1-1 | 3.484,1 kbyte | 4.397,0 kbyte | [filförteckning] |
| mips64el | 5.0.1-1 | 3.449,6 kbyte | 4.161,0 kbyte | [filförteckning] |
| ppc64 (inofficiell anpassning) | 5.0.1-1 | 3.470,0 kbyte | 4.206,0 kbyte | [filförteckning] |
| ppc64el | 5.0.1-1 | 3.482,4 kbyte | 4.202,0 kbyte | [filförteckning] |
| riscv64 | 5.0.1-1+b1 | 3.467,7 kbyte | 3.990,0 kbyte | [filförteckning] |
| s390x | 5.0.1-1 | 3.477,5 kbyte | 4.122,0 kbyte | [filförteckning] |
| sparc64 (inofficiell anpassning) | 5.0.1-1 | 3.434,8 kbyte | 4.720,0 kbyte | [filförteckning] |
| x32 (inofficiell anpassning) | 4.3.0-1 | 2.990,8 kbyte | 3.547,0 kbyte | [filförteckning] |