Paket: python3-pairtools (1.0.3-1 och andra)

Länkar för python3-pairtools

Debianresurser:

Hämta källkodspaketet pairtools:

Ansvariga:

Externa resurser:

Hemsida [github.com]

Liknande paket:

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Andra paket besläktade med python3-pairtools

beror

rekommenderar

föreslår

enhances

dep: cython3 [hppa, ia64, ppc64, sparc64, x32]

C-Extensions for Python 3
dep: libc6 (>= 2.14) [amd64]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.3.4) [hppa]

dep: libc6 (>= 2.37) [sh4]

dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el, ppc64, sparc64]
dep: libc6.1 (>= 2.33) [ia64]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb

dep: libc6.1 (>= 2.4) [alpha]
dep: libgcc-s1 (>= 3.0) [alpha, amd64, arm64, i386, mips64el, ppc64el, riscv64, sh4]

GCC stödbibliotek

dep: libgcc-s1 (>= 3.5) [armel, armhf]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC stödbibliotek
dep: libstdc++6 (>= 11) [ej hppa, ia64, ppc64, sparc64, x32]

GNU standardbibliotek v3 för C++
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.11) [ia64, x32]

dep: python3 (<< 3.12) [hppa, ppc64, sparc64]

dep: python3 (<< 3.13) [ej hppa, ia64, ppc64, sparc64, x32]

dep: python3 (>= 3.10~) [hppa, ia64, ppc64, sparc64, x32]

dep: python3 (>= 3.11~) [ej hppa, ia64, ppc64, sparc64, x32]
dep: python3-bioframe [ej hppa, ia64, ppc64, sparc64, x32]

library to enable flexible, scalable operations on genomic interval dataframes
dep: python3-click

Wrapper around optparse for command line utilities - Python 3.x
dep: python3-nose [hppa, ia64, ppc64, sparc64, x32]

test discovery and running for Python3 unittest
dep: python3-numpy (>= 1:1.20.0) [hppa, ia64, ppc64, sparc64, x32]

Fast array facility to the Python language (Python 3)

dep: python3-numpy (>= 1:1.22.0) [ej hppa, ia64, ppc64, sh4, sparc64, x32]

dep: python3-numpy (>= 1:1.25.0) [sh4]
dep: python3-numpy-abi9

virtuellt paket som tillhandahålls av python3-numpy
dep: python3-pandas [ej hppa, ia64, ppc64, sparc64, x32]

data structures for "relational" or "labeled" data
dep: python3-pysam (>= 0.20.0+ds-3~) [ej hppa, ia64, ppc64, sparc64, x32]

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy [ej hppa, ia64, ppc64, sparc64, x32]

scientific tools for Python 3
dep: python3-yaml [ej hppa, ia64, ppc64, sparc64, x32]

YAML parser and emitter for Python3

sug: python3-pairtools-examples (>= 1.0.2)

Process sequencing data from a Hi-C experiment (examples)

Hämta python3-pairtools

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.0.3-1	207,9 kbyte	1.177,0 kbyte	[filförteckning]
amd64	1.0.3-1	226,4 kbyte	1.021,0 kbyte	[filförteckning]
arm64	1.0.3-1	202,3 kbyte	1.043,0 kbyte	[filförteckning]
armel	1.0.3-1	199,0 kbyte	903,0 kbyte	[filförteckning]
armhf	1.0.3-1	203,9 kbyte	763,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	0.3.0-3.2+b2	144,6 kbyte	640,0 kbyte	[filförteckning]
i386	1.0.3-1	226,5 kbyte	1.007,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	0.3.0-3.2+b1	137,3 kbyte	612,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.0.3-1	202,5 kbyte	923,0 kbyte	[filförteckning]
mips64el	1.0.3-1	194,3 kbyte	1.191,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	0.3.0-3.2+b2	146,6 kbyte	752,0 kbyte	[filförteckning]
ppc64el	1.0.3-1	217,0 kbyte	1.171,0 kbyte	[filförteckning]
riscv64	1.0.3-1	221,6 kbyte	871,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.0.3-1+b1	309,0 kbyte	1.152,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	0.3.0-3.2+b2	125,9 kbyte	2.292,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	0.3.0-3.2+b1	121,6 kbyte	405,0 kbyte	[filförteckning]