Paket: theseus (3.3.0-9)

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superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Märken: Biologi: Proteiner, Field: Biologi, field::biology:bioinformatics, field::biology:structural, Implemented in: C, User Interface: interface::commandline, role::program, Purpose: Analysing, use::comparing, works-with-format::plaintext

Andra paket besläktade med theseus

beror

rekommenderar

föreslår

enhances

dep: clustalo

General-purpose multiple sequence alignment program for proteins
dep: libc6 (>= 2.29)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgsl25 (>= 2.6)

GNU Scientific Library (GSL) -- library package
dep: muscle

Multiple alignment program of protein sequences

sug: clustalw

global multiple nucleotide or peptide sequence alignment
sug: dialign

Segment-based multiple sequence alignment
sug: kalign

Global and progressive multiple sequence alignment
sug: mafft

Multiple alignment program for amino acid or nucleotide sequences
sug: probcons

PROBabilistic CONSistency-based multiple sequence alignment
sug: t-coffee

Multiple Sequence Alignment
sug: theseus-examples

superimpose macromolecules using maximum likelihood (examples)

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