Paket: khmer (2.1.2+dfsg-8)

Länkar för khmer

Debianresurser:

Hämta källkodspaketet khmer:

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Externa resurser:

Hemsida [khmer.readthedocs.org]

Liknande paket:

in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Märken: Biologi: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, implemented-in::python, User Interface: Command Line, Role: role::program, use::analysing, Purpose: Comparing, Filtering

Andra paket besläktade med khmer

beror

rekommenderar

föreslår

enhances

dep: cython3 (>= 0.26.1)

C-Extensions for Python 3
dep: khmer-common

common files for the khmer project tools
dep: libbz2-1.0

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.29)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.0) [arm64]

GCC stödbibliotek

dep: libgcc-s1 (>= 3.4) [amd64]
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 5.2)

GNU standardbibliotek v3 för C++
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.10)

dep: python3 (>= 3.9~)
dep: python3-bz2file

Python3 library for reading and writing bzip2-compressed files
dep: python3-screed (>= 1.0)

short nucleotide read sequence utils in Python 3
dep: zlib1g (>= 1:1.2.3.4)

Kompressionsbibliotek - körtidspaket

Hämta khmer

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	6.586,5 kbyte	29.785,0 kbyte	[filförteckning]
arm64	6.491,9 kbyte	29.482,0 kbyte	[filförteckning]