Paket: spaln (2.4.1+dfsg-3)

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Hemsida [www.genome.ist.i.kyoto-u.ac.jp]

Liknande paket:

splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

Andra paket besläktade med spaln

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.29)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.3.1)

GCC stödbibliotek
dep: libstdc++6 (>= 5)

GNU standardbibliotek v3 för C++
dep: spaln-data

splicing-aware transcript-alignment to genomic DNA (data)
dep: zlib1g (>= 1:1.2.0.2)

Kompressionsbibliotek - körtidspaket

Hämta spaln

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
i386	349,5 kbyte	881,0 kbyte	[filförteckning]