Paket: r-bioc-singler (1.4.1+ds-1)

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BioConductor reference-based single-cell RNA-Seq annotation

Performs unbiased cell type recognition from single-cell RNA sequencing data, by leveraging reference transcriptomic datasets of pure cell types to infer the cell of origin of each single cell independently.

Andra paket besläktade med r-bioc-singler

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.4)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC stödbibliotek
dep: libstdc++6 (>= 5.2)

GNU standardbibliotek v3 för C++
dep: r-api-4.0

virtuellt paket som tillhandahålls av r-base-core
dep: r-api-bioc-3.12

virtuellt paket som tillhandahålls av r-bioc-biocgenerics
dep: r-base-core (>= 4.0.3-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-beachmat

I/O for several formats storing matrix data
dep: r-bioc-biocneighbors

Nearest Neighbor Detection for Bioconductor Packages
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biocsingular

Singular Value Decomposition for Bioconductor Packages
dep: r-bioc-delayedarray

BioConductor delayed operations on array-like objects
dep: r-bioc-delayedmatrixstats

Functions on Rows and Columns of 'DelayedMatrix' Objects
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-rcpp

GNU R package for Seamless R and C++ Integration

rec: r-bioc-ensembldb

GNU R utilities to create and use an Ensembl based annotation database
rec: r-bioc-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
rec: r-bioc-scran

BioConductor methods for single-cell RNA-Seq data analysis
rec: r-bioc-singlecellexperiment

S4 Classes for Single Cell Data
rec: r-cran-pheatmap

GNU R package to create pretty heatmaps
rec: r-cran-testthat

GNU R testsuite

sug: r-bioc-biocgenerics

generic functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-scuttle

BioConductor single-cell RNA-Seq analysis utilities
sug: r-cran-ggplot2

implementation of the Grammar of Graphics
sug: r-cran-gridextra

GNU R package with extensions for the grid package
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-viridis

GNU R package for color maps from matplotlib

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Arkitektur	Paketstorlek	Installerad storlek	Filer
i386	274,8 kbyte	530,0 kbyte	[filförteckning]