[ Källkod: prime-phylo ]
Paket: prime-phylo (1.0.11-9 och andra)
Länkar för prime-phylo
Debianresurser:
Hämta källkodspaketet prime-phylo:
Ansvariga:
Externa resurser:
- Hemsida [prime.sbc.su.se]
Liknande paket:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Andra paket besläktade med prime-phylo
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- eller libblas.so.3
- virtuellt paket som tillhandahålls av libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libboost-mpi1.74.0 (>= 1.74.0)
- C++ interface to the Message Passing Interface (MPI)
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- dep: libboost-serialization1.74.0 (>= 1.74.0)
- serialization library for C++
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- dep: libc6 (>= 2.29)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC stödbibliotek
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- eller liblapack.so.3
- virtuellt paket som tillhandahålls av libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libopenmpi3 (>= 4.0.5)
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 9)
- GNU standardbibliotek v3 för C++
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- dep: libxml2 (>= 2.7.4)
- GNOME XML library
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mrbayes
- Bayesian Inference of Phylogeny
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- sug: muscle
- Multiple alignment program of protein sequences
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- sug: njplot
- phylogenetic tree drawing program
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
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- sug: python3-biopython
- Python3 library for bioinformatics
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- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- sug: treeviewx
- Displays and prints phylogenetic trees
Hämta prime-phylo
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| armel | 1.0.11-9+b1 | 676,5 kbyte | 2.527,0 kbyte | [filförteckning] |