Paket: resfinder (3.2-3)

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Hemsida [bitbucket.org]

Liknande paket:

identify acquired antimicrobial resistance genes

ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.

ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.

Andra paket besläktade med resfinder

beror

rekommenderar

föreslår

enhances

dep: ncbi-blast+-legacy

NCBI Blast legacy call script
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-cgecore

Python3 module for the Center for Genomic Epidemiology
dep: python3-distutils

distutils package for Python 3.x
dep: python3-tabulate

pretty-print tabular data in Python3
dep: resfinder-db

ResFinder database is a curated database of acquired resistance genes

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	10,6 kbyte	47,0 kbyte	[filförteckning]