Paket: discosnp (4.4.4-1)

Länkar för discosnp

Debianresurser:

Hämta källkodspaketet discosnp:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Olivier Sallou (QA-sida)
Andreas Tille (QA-sida)

Externa resurser:

Hemsida [colibread.inria.fr]

Liknande paket:

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

Andra paket besläktade med discosnp

beror

rekommenderar

föreslår

enhances

dep: gatb-core

Genome Analysis Toolbox with de-Bruijn graph
dep: libc6 (>= 2.29)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgatbcore3 (>= 1.4.2+dfsg)

dynamic library of the Genome Analysis Toolbox
dep: libgcc-s1 (>= 3.0)

GCC stödbibliotek
dep: libhdf5-103-1

HDF5 C runtime files - serial version
dep: libstdc++6 (>= 9)

GNU standardbibliotek v3 för C++
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.2.6)

Kompressionsbibliotek - körtidspaket

Hämta discosnp

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	1.132,4 kbyte	2.560,0 kbyte	[filförteckning]