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/usr/bin/addUnalignedIntervals
/usr/bin/alignmentProjector
/usr/bin/backbone_global_to_local
/usr/bin/bbAnalyze
/usr/bin/bbFilter
/usr/bin/coordinateTranslate
/usr/bin/createBackboneMFA
/usr/bin/extractBCITrees
/usr/bin/getAlignmentWindows
/usr/bin/getOrthologList
/usr/bin/makeBadgerMatrix
/usr/bin/mauveAligner
/usr/bin/mauveToXMFA
/usr/bin/mfa2xmfa
/usr/bin/progressiveMauve
/usr/bin/projectAndStrip
/usr/bin/randomGeneSample
/usr/bin/repeatoire
/usr/bin/scoreAlignment
/usr/bin/stripGapColumns
/usr/bin/stripSubsetLCBs
/usr/bin/toGrimmFormat
/usr/bin/toMultiFastA
/usr/bin/toRawSequence
/usr/bin/uniqueMerCount
/usr/bin/uniquifyTrees
/usr/bin/xmfa2maf
/usr/share/doc/progressivemauve/README.test
/usr/share/doc/progressivemauve/changelog.Debian.gz
/usr/share/doc/progressivemauve/changelog.Debian.mips64el.gz
/usr/share/doc/progressivemauve/copyright
/usr/share/doc/progressivemauve/run-unit-test
/usr/share/doc/progressivemauve/test_data/all_virii.fasta.gz
/usr/share/doc/progressivemauve/test_data/genome_1.gbk.gz
/usr/share/doc/progressivemauve/test_data/genome_2.gbk.gz
/usr/share/doc/progressivemauve/test_data/genome_3.gbk.gz
/usr/share/man/man1/addUnalignedIntervals.1.gz
/usr/share/man/man1/alignmentProjector.1.gz
/usr/share/man/man1/backbone_global_to_local.1.gz
/usr/share/man/man1/bbAnalyze.1.gz
/usr/share/man/man1/bbFilter.1.gz
/usr/share/man/man1/coordinateTranslate.1.gz
/usr/share/man/man1/createBackboneMFA.1.gz
/usr/share/man/man1/extractBCITrees.1.gz
/usr/share/man/man1/getAlignmentWindows.1.gz
/usr/share/man/man1/getOrthologList.1.gz
/usr/share/man/man1/makeBadgerMatrix.1.gz
/usr/share/man/man1/mauveAligner.1.gz
/usr/share/man/man1/mauveToXMFA.1.gz
/usr/share/man/man1/mfa2xmfa.1.gz
/usr/share/man/man1/progressiveMauve.1.gz
/usr/share/man/man1/projectAndStrip.1.gz
/usr/share/man/man1/randomGeneSample.1.gz
/usr/share/man/man1/repeatoire.1.gz
/usr/share/man/man1/scoreAlignment.1.gz
/usr/share/man/man1/stripGapColumns.1.gz
/usr/share/man/man1/stripSubsetLCBs.1.gz
/usr/share/man/man1/toGrimmFormat.1.gz
/usr/share/man/man1/toMultiFastA.1.gz
/usr/share/man/man1/toRawSequence.1.gz
/usr/share/man/man1/uniqueMerCount.1.gz
/usr/share/man/man1/uniquifyTrees.1.gz
/usr/share/man/man1/xmfa2maf.1.gz