Paket: r-bioc-genomicalignments (1.34.0-1)

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BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Andra paket besläktade med r-bioc-genomicalignments

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.4)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: r-api-4.0

virtuellt paket som tillhandahålls av r-base-core
dep: r-api-bioc-3.16

virtuellt paket som tillhandahålls av r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biocgenerics (>= 0.37.0)

generic functions for Bioconductor
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.55.7)

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb (>= 1.13.1)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges (>= 1.41.5)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.23.9)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rsamtools (>= 1.31.2)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-s4vectors (>= 0.27.12)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment (>= 1.9.13)

BioConductor assay container

sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-bsgenome

BioConductor infrastructure for Biostrings-based genome data packages
sug: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-edger

Empirical analysis of digital gene expression data in R
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks
sug: r-bioc-shortread

GNU R classes and methods for high-throughput short-read sequencing data
sug: r-cran-runit

GNU R package providing unit testing framework

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
armhf	2.059,2 kbyte	2.904,0 kbyte	[filförteckning]