Balík: progressivemauve (1.2.0+4713+dfsg-5 a iné)
Odkazy pre progressivemauve
Zdroje Debian:
Stiahnuť zdrojový balík progressivemauve:
- [progressivemauve_1.2.0+4713+dfsg-5.dsc]
- [progressivemauve_1.2.0+4713+dfsg.orig.tar.xz]
- [progressivemauve_1.2.0+4713+dfsg-5.debian.tar.xz]
Správcovia:
Externé zdroje:
- Domovská stránka [darlinglab.org]
Podobné balíky:
multiple genome alignment algorithms
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
Ostatné balíky súvisiace s balíkom progressivemauve
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- dep: libboost-filesystem1.83.0 (>= 1.83.0)
- operácie so súborovým systémom (portabilné cesty, prechádzanie adresárov atď.) v C++
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- knižnica Boost.Iostreams
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- dep: libboost-program-options1.83.0 (>= 1.83.0)
- knižnica volieb programu pre C++
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- dep: libc6 (>= 2.34)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libgcc-s1 (>= 3.4)
- podporná knižnica GCC
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- dep: libgenome0 (>= 1.3.11+svn20110227.4616)
- toolkit for developing bioinformatic related software
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- dep: libmems1t64 (>= 1.6.0+4725)
- library to support DNA string matching and comparative genomics
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- dep: libstdc++6 (>= 13.1)
- štandardná knižnica C++ GNU v3
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- enh: mauve-aligner
- multiple genome alignment
Stiahnuť progressivemauve
| Architektúra | Verzia | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|---|
| mips64el | 1.2.0+4713+dfsg-5+b3 | 823.7 kB | 6,838.0 kB | [zoznam súborov] |