Balík: chimeraslayer (20101212+dfsg1-6)
Odkazy pre chimeraslayer
Zdroje Debian:
Stiahnuť zdrojový balík microbiomeutil:
- [microbiomeutil_20101212+dfsg1-6.dsc]
- [microbiomeutil_20101212+dfsg1.orig.tar.xz]
- [microbiomeutil_20101212+dfsg1-6.debian.tar.xz]
Správcovia:
- Debian Med Packaging Team (Stránka QA, Konferencia)
- Steffen Moeller (Stránka QA)
- Andreas Tille (Stránka QA)
Externé zdroje:
- Domovská stránka [microbiomeutil.sourceforge.net]
Podobné balíky:
detects likely chimeras in PCR amplified DNA
ChimeraSlayer is a chimeric sequence detection utility, compatible with near-full length Sanger sequences and shorter 454-FLX sequences (~500bp).
Chimera Slayer involves the following series of steps that operate to flag chimeric 16S rRNA sequences:
1. the ends of a query sequence are searched against an included database of reference chimera-free 16S sequences to identify potential parents of a chimera 2. candidate parents of a chimera are selected as those that form a branched best scoring alignment to the NAST-formatted query sequence 3. the NAST alignment of the query sequence is improved in a ‘chimera-aware’ profile-based NAST realignment to the selected reference parent sequences 4. an evolutionary framework is used to flag query sequences found to exhibit greater sequence homology to an in silico chimera formed between any two of the selected reference parent sequences.
To run Chimera Slayer, you need NAST-formatted sequences generated by the nast-ier utility.
ChimeraSlayer is part of the microbiomeutil suite.
Ostatné balíky súvisiace s balíkom chimeraslayer
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- dep: cdbfasta
- Constant DataBase indexing and retrieval tools for multi-FASTA files
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- dep: microbiomeutil-data
- Reference 16S sequences and NAST-alignments used by microbiomeutil tools
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- dep: ncbi-blast+-legacy
- NCBI Blast legacy call script
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- rec: nast-ier
- NAST-based DNA alignment tool
Stiahnuť chimeraslayer
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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all | 32.3 kB | 154.0 kB | [zoznam súborov] |