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/usr/bin/hinge
/usr/lib/hinge/Reads_filter
/usr/lib/hinge/Visualise_graph.py
/usr/lib/hinge/add_groundtruth.py
/usr/lib/hinge/add_groundtruth_json.py
/usr/lib/hinge/clip_ends.py
/usr/lib/hinge/compute_n50_from_draft.py
/usr/lib/hinge/condense_graph.py
/usr/lib/hinge/condense_graph_and_annotate.py
/usr/lib/hinge/condense_graph_annotate_clip_ends.py
/usr/lib/hinge/condense_graph_create_gfa_compute_n50.py
/usr/lib/hinge/condense_graph_with_gt.py
/usr/lib/hinge/connected.py
/usr/lib/hinge/consensus
/usr/lib/hinge/correct_head.py
/usr/lib/hinge/create_bandage_file.py
/usr/lib/hinge/create_hgraph.py
/usr/lib/hinge/create_hgraph_nogt.py
/usr/lib/hinge/download_NCTC_pipeline.py
/usr/lib/hinge/draft_assembly
/usr/lib/hinge/draft_assembly.py
/usr/lib/hinge/draft_assembly_not_perfect.py
/usr/lib/hinge/draw2.py
/usr/lib/hinge/draw2_pileup.py
/usr/lib/hinge/draw2_pileup_region.py
/usr/lib/hinge/draw2_pileup_w_repeat.py
/usr/lib/hinge/draw_pileup_region.py
/usr/lib/hinge/draw_pileup_region_find_bridges.py
/usr/lib/hinge/fasta_to_fastq.py
/usr/lib/hinge/get_NCTC_json.py
/usr/lib/hinge/get_consensus_gfa.py
/usr/lib/hinge/get_draft_annotation.py
/usr/lib/hinge/get_draft_path.py
/usr/lib/hinge/get_draft_path_norevcomp.py
/usr/lib/hinge/get_maximal_reads
/usr/lib/hinge/get_single_strand.py
/usr/lib/hinge/hinging
/usr/lib/hinge/interface_utils.py
/usr/lib/hinge/longest_path.py
/usr/lib/hinge/merge_hinges.py
/usr/lib/hinge/parallel_draw.sh
/usr/lib/hinge/parallel_draw_large.sh
/usr/lib/hinge/parse.py
/usr/lib/hinge/parse_alignment.py
/usr/lib/hinge/parse_qv.py
/usr/lib/hinge/parse_read.py
/usr/lib/hinge/pileup.ipynb
/usr/lib/hinge/pipeline_consensus.py
/usr/lib/hinge/pipeline_consensus_norevcomp.py
/usr/lib/hinge/pipeline_nctc.py
/usr/lib/hinge/pruning_and_clipping.py
/usr/lib/hinge/pruning_and_clipping_nanopore.py
/usr/lib/hinge/random_condensation.py
/usr/lib/hinge/repeat_annotate_reads.py
/usr/lib/hinge/run_mapping.py
/usr/lib/hinge/run_mapping2.py
/usr/lib/hinge/run_mapping3.py
/usr/lib/hinge/run_parse_alignment.py
/usr/lib/hinge/run_parse_read.py
/usr/lib/hinge/split_las.py
/usr/lib/hinge/unitig.py
/usr/share/doc/hinge/README.md.gz
/usr/share/doc/hinge/changelog.Debian.gz
/usr/share/doc/hinge/copyright
/usr/share/doc/hinge/examples/demo/NCTC9657_demo/run.sh
/usr/share/doc/hinge/examples/demo/ecoli_P4_demo/run.sh
/usr/share/doc/hinge/examples/demo/ecoli_demo/run.sh
/usr/share/doc/hinge/examples/demo/ecoli_demo/run_norevcomp.sh
/usr/share/doc/hinge/examples/demo/ecoli_nanopore/run.sh
/usr/share/doc/hinge/examples/demo/yeast_W303_demo/nominal.ini
/usr/share/doc/hinge/examples/demo/yeast_W303_demo/run.sh
/usr/share/doc/hinge/examples/utils/nominal.ini
/usr/share/doc/hinge/parameter_description.md.gz
/usr/share/man/man1/hinge.1.gz