Balík: jellyfish-examples (2.2.10-2)
Odkazy pre jellyfish-examples
Zdroje Debian:
Stiahnuť zdrojový balík jellyfish:
Správcovia:
- Debian Med Packaging Team (Stránka QA, Konferencia)
- Shaun Jackman (Stránka QA)
- Andreas Tille (Stránka QA)
- Michael R. Crusoe (Stránka QA)
Externé zdroje:
- Domovská stránka [www.cbcb.umd.edu]
Podobné balíky:
count k-mers in DNA sequences (examples for testing)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains examples to test the package
Ostatné balíky súvisiace s balíkom jellyfish-examples
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- dep: jellyfish
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.17)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- podporná knižnica GCC
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- dep: libjellyfish-2.0-2
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 5.2)
- štandardná knižnica C++ GNU v3
Stiahnuť jellyfish-examples
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| arm64 | 419.4 kB | 1,843.0 kB | [zoznam súborov] |