[ Zdroj: r-bioc-purecn ]
Balík: r-bioc-purecn (1.20.0+dfsg-3)
Odkazy pre r-bioc-purecn
Zdroje Debian:
Stiahnuť zdrojový balík r-bioc-purecn:
- [r-bioc-purecn_1.20.0+dfsg-3.dsc]
- [r-bioc-purecn_1.20.0+dfsg.orig.tar.xz]
- [r-bioc-purecn_1.20.0+dfsg-3.debian.tar.xz]
Správcovia:
Externé zdroje:
- Domovská stránka [bioconductor.org]
Podobné balíky:
copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.
Ostatné balíky súvisiace s balíkom r-bioc-purecn
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- dep: r-api-4.0
- virtuálny balík poskytovaný balíkom r-base-core
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- dep: r-api-bioc-3.12
- virtuálny balík poskytovaný balíkom r-bioc-biocgenerics
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- dep: r-base-core (>= 4.0.3-1)
- jadro GNU R na štatistické výpočty a grafický systém
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- dep: r-bioc-biocgenerics
- generic functions for Bioconductor
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- dep: r-bioc-biostrings
- GNU R string objects representing biological sequences
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- dep: r-bioc-dnacopy
- R package: DNA copy number data analysis
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- dep: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- dep: r-bioc-genomicranges (>= 1.20.3)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.2.1)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rhdf5
- BioConductor HDF5 interface to R
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- dep: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment
- BioConductor assay container
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- dep: r-bioc-variantannotation (>= 1.14.1)
- BioConductor annotation of genetic variants
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- dep: r-cran-data.table
- GNU R - rozšírenie Data.frame
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- dep: r-cran-futile.logger
- logging utility for GNU R
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- dep: r-cran-ggplot2
- implementácia Gramatiky grafiky
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- dep: r-cran-gridextra
- GNU R - balík s rozšíreniami balíka grid
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- dep: r-cran-matrix
- balík tried GNU R pre husté a riedke matice
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- dep: r-cran-rcolorbrewer
- balík GNU R poskytujúci vhodné palety farieb
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- dep: r-cran-vgam
- GNU R package for estimating vector generalized additive models
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- rec: r-cran-testthat
- GNU R testsuite
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- sug: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-org.hs.eg.db
- genome-wide annotation for Human
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- sug: r-cran-covr
- test coverage for GNU R packages
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- sug: r-cran-jsonlite
- robustný, výkonný nástroj na tvorbu a spracovanie JSON pre R
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- sug: r-cran-knitr
- balík GNU R na dynamickú tvorbu zostáv pomocou Literate Programming
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- sug: r-cran-optparse
- GNU/R Command line option parser
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- sug: r-cran-pscbs
- R package: Analysis of Parent-Specific DNA Copy Numbers
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
Stiahnuť r-bioc-purecn
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| all | 5,180.1 kB | 8,174.0 kB | [zoznam súborov] |