Package: python3-pairtools (0.3.0-3.2 and others) [debports]

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Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

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Architecture	Version	Package Size	Installed Size	Files
sparc64 (unofficial port)	0.3.0-3.2+b2	125.9 kB	2,292.0 kB	[list of files]