Package: python3-pairtools (1.1.3-2 and others)

Links for python3-pairtools

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Download Source Package pairtools:

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External Resources:

Homepage [github.com]

Similar packages:

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

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dep: cython3 [hppa, ia64, ppc64, sparc64, x32]

C-Extensions for Python 3
dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.3.4) [hppa]

dep: libc6 (>= 2.4) [m68k, mips64el, ppc64, sparc64]

dep: libc6 (>= 2.40) [sh4]

dep: libc6 (>= 2.41) [loong64]
dep: libc6.1 (>= 2.33) [ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.4) [alpha]
dep: libgcc-s1 (>= 3.0) [not hppa, ia64, m68k, ppc64, sparc64, x32]

GCC support library
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC support library
dep: libstdc++6 (>= 11) [not hppa, ia64, ppc64, sparc64, x32]

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.11) [ia64, x32]

dep: python3 (<< 3.12) [hppa, ppc64, sparc64]

dep: python3 (<< 3.14) [not hppa, ia64, ppc64, sparc64, x32]

dep: python3 (>= 3.10~) [hppa, ia64, ppc64, sparc64, x32]

dep: python3 (>= 3.12~) [m68k, sh4]

dep: python3 (>= 3.13~) [alpha, amd64, arm64, loong64, mips64el, ppc64el, riscv64]
dep: python3-bioframe [not hppa, ia64, ppc64, sparc64, x32]

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dep: python3-click

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Package not available
dep: python3-numpy [alpha, amd64, arm64, loong64, mips64el, ppc64el, riscv64]

Python library for numerical computations (Python 3)

dep: python3-numpy (>= 1:1.20.0) [hppa, ia64, ppc64, sparc64, x32]

dep: python3-numpy (>= 1:1.25.0) [m68k, sh4]
dep: python3-numpy-abi9 [hppa, ia64, m68k, ppc64, sh4, sparc64, x32]

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dep: python3-numpy2-abi0 [alpha, amd64, arm64, loong64, mips64el, ppc64el, riscv64]

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or python3-numpy-abi9

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YAML parser and emitter for Python3

sug: python3-pairtools-examples (>= 1.0.2)

Process sequencing data from a Hi-C experiment (examples)

Download python3-pairtools

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.1.3-2	188.6 kB	927.0 kB	[list of files]
amd64	1.1.3-2	203.1 kB	840.0 kB	[list of files]
arm64	1.1.3-2	184.4 kB	924.0 kB	[list of files]
hppa (unofficial port)	0.3.0-3.2+b2	144.6 kB	640.0 kB	[list of files]
ia64 (unofficial port)	0.3.0-3.2+b1	137.3 kB	612.0 kB	[list of files]
loong64 (unofficial port)	1.1.3-2	194.3 kB	924.0 kB	[list of files]
m68k (unofficial port)	1.1.2-1	216.9 kB	1,096.0 kB	[list of files]
mips64el	1.1.3-2	180.0 kB	939.0 kB	[list of files]
ppc64 (unofficial port)	0.3.0-3.2+b2	146.6 kB	752.0 kB	[list of files]
ppc64el	1.1.3-2	196.3 kB	988.0 kB	[list of files]
riscv64	1.1.3-2	198.1 kB	732.0 kB	[list of files]
sh4 (unofficial port)	1.1.2-1	279.6 kB	1,312.0 kB	[list of files]
sparc64 (unofficial port)	0.3.0-3.2+b2	125.9 kB	2,292.0 kB	[list of files]
x32 (unofficial port)	0.3.0-3.2+b1	121.6 kB	405.0 kB	[list of files]