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[ Source: libedlib  ]

Package: libedlib1 (1.2.7-6 and others)

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library for sequence alignment using edit distance

A lightweight and super fast C/C++ library for sequence alignment using edit distance.

Calculating edit distance of two strings is as simple as:

 edlibAlign("hello", 5, "world!", 6,
            edlibDefaultAlignConfig()).editDistance;
Features

 * Calculates edit distance (Levehnstein distance).
 * It can find optimal alignment path (instructions how to transform
   first sequence into the second sequence).
 * It can find just the start and/or end locations of alignment path -
   can be useful when speed is more important than having exact
   alignment path.
 * Supports multiple alignment methods: global(NW), prefix(SHW) and
   infix(HW), each of them useful for different scenarios.
 * You can extend character equality definition, enabling you to e.g.
   have wildcard characters, to have case insensitive alignment or to
   work with degenerate nucleotides.
 * It can easily handle small or very large sequences, even when finding
   alignment path, while consuming very little memory.
 * Super fast thanks to Myers's bit-vector algorithm.

This package contains the shared library.

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Download libedlib1

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.2.7-6 15.9 kB83.0 kB [list of files]
amd64 1.2.7-6+b2 17.7 kB51.0 kB [list of files]
arm64 1.2.7-6+b2 17.0 kB83.0 kB [list of files]
armel 1.2.7-6+b2 14.7 kB43.0 kB [list of files]
armhf 1.2.7-6+b2 15.0 kB39.0 kB [list of files]
hppa (unofficial port) 1.2.7-6+b1 17.6 kB43.0 kB [list of files]
i386 1.2.7-6+b2 17.5 kB51.0 kB [list of files]
ia64 (unofficial port) 1.2.7-5 19.8 kB62.0 kB [list of files]
m68k (unofficial port) 1.2.7-6+b2 16.6 kB51.0 kB [list of files]
mips64el 1.2.7-6+b2 16.2 kB84.0 kB [list of files]
ppc64 (unofficial port) 1.2.7-6+b2 17.6 kB83.0 kB [list of files]
ppc64el 1.2.7-6+b2 19.6 kB83.0 kB [list of files]
riscv64 1.2.7-6+b2 15.5 kB39.0 kB [list of files]
s390x 1.2.7-6+b2 18.9 kB51.0 kB [list of files]
sh4 (unofficial port) 1.2.7-6+b2 18.6 kB83.0 kB [list of files]
sparc64 (unofficial port) 1.2.7-6+b2 15.0 kB1,044.0 kB [list of files]
x32 (unofficial port) 1.2.7-5+b1 17.3 kB47.0 kB [list of files]