Package: jellyfish (2.3.1-4 and others)

Links for jellyfish

Debian Resources:

Download Source Package jellyfish:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Shaun Jackman (QA Page)
Andreas Tille (QA Page)
Michael R. Crusoe (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [www.genome.umd.edu]

Similar packages:

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Other Packages Related to jellyfish

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [hppa]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.38) [not hppa, ia64]
dep: libc6.1 (>= 2.31) [ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
dep: libgcc-s1 (>= 3.0) [not hppa, ia64, riscv64]

GCC support library

dep: libgcc-s1 (>= 3.4) [riscv64]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC support library
dep: libhts3 (>= 1.10) [ia64]

C library for high-throughput sequencing data formats

dep: libhts3 (>= 1.17) [hppa]
dep: libhts3t64 (>= 1.17) [not hppa, ia64]

C library for high-throughput sequencing data formats
dep: libjellyfish-2.0-2 (= 2.3.0-12) [ia64]

count k-mers in DNA sequences (dynamic library of jellyfish)

dep: libjellyfish-2.0-2 (= 2.3.1-2+b1) [hppa]

dep: libjellyfish-2.0-2 (= 2.3.1-4) [not hppa, ia64]
dep: libstdc++6 (>= 13.1) [hppa]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 14) [not hppa, ia64]

dep: libstdc++6 (>= 9) [ia64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime

Download jellyfish

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
amd64	2.3.1-4	788.8 kB	2,526.0 kB	[list of files]
arm64	2.3.1-4	708.1 kB	2,510.0 kB	[list of files]
hppa (unofficial port)	2.3.1-2+b1	682.7 kB	2,079.0 kB	[list of files]
ia64 (unofficial port)	2.3.0-12	847.7 kB	5,022.0 kB	[list of files]
mips64el	2.3.1-4	665.6 kB	3,081.0 kB	[list of files]
ppc64el	2.3.1-4	744.5 kB	2,894.0 kB	[list of files]
riscv64	2.3.1-4	755.4 kB	1,962.0 kB	[list of files]