Package: spaln (3.0.2+dfsg-2) [debports]
Links for spaln
Debian Resources:
Download Source Package :
Not foundMaintainers:
External Resources:
- Homepage [github.com]
Similar packages:
splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.
spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.
Other Packages Related to spaln
|
|
|
|
-
- dep: libc6.1 (>= 2.37)
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
-
- dep: libgcc-s1 (>= 4.2)
- GCC support library
-
- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
-
- dep: libstdc++6 (>= 5)
- GNU Standard C++ Library v3
-
- dep: libunwind8
- library to determine the call-chain of a program - runtime
-
- dep: spaln-data
- splicing-aware transcript-alignment to genomic DNA (data)
-
- dep: zlib1g (>= 1:1.2.0.2)
- compression library - runtime
Download spaln
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
ia64 (unofficial port) | 679.9 kB | 3,602.0 kB | [list of files] |