Package: lagan (2.0-10) [debports]

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Homepage [lagan.stanford.edu]

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highly parametrizable pairwise global genome sequence aligner

Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors.

Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.

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Architecture	Package Size	Installed Size	Files
ia64 (unofficial port)	213.5 kB	1,035.0 kB	[list of files]