Package: covtobed (1.3.5+dfsg-2) [debports]

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convert the coverage track from a BAM file into a BED file

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

Other Packages Related to covtobed

depends

recommends

suggests

enhances

dep: bamtools

toolkit for manipulating BAM (genome alignment) files
dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

dynamic library for manipulating BAM (genome alignment) files
dep: libc6.1 (>= 2.37)

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: libunwind8

library to determine the call-chain of a program - runtime
dep: zlib1g

compression library - runtime

Download covtobed

Download for all available architectures
Architecture	Package Size	Installed Size	Files
ia64 (unofficial port)	57.1 kB	240.0 kB	[list of files]