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[ Source: sga  ]

Package: sga (0.10.15-7 and others)

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de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

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Download sga

Download for all available architectures
Architecture Version Package Size Installed Size Files
armel 0.10.15-7+b1 564.3 kB1,727.0 kB [list of files]