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[ Source: covtobed  ]

Package: covtobed (1.3.5+dfsg-2)

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convert the coverage track from a BAM file into a BED file

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

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Download covtobed

Download for all available architectures
Architecture Package Size Installed Size Files
armel 42.8 kB125.0 kB [list of files]