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/usr/bin/ragout
/usr/bin/ragout-maf2synteny
/usr/bin/ragout-overlap
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/top_level.txt
/usr/lib/python3/dist-packages/ragout/__init__.py
/usr/lib/python3/dist-packages/ragout/__version__.py
/usr/lib/python3/dist-packages/ragout/assembly_graph/__init__.py
/usr/lib/python3/dist-packages/ragout/assembly_graph/assembly_refine.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/__init__.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/breakpoint_graph.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/chimera_detector.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/inferer.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/permutation.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/repeat_resolver.py
/usr/lib/python3/dist-packages/ragout/maf2synteny/__init__.py
/usr/lib/python3/dist-packages/ragout/maf2synteny/maf2synteny.py
/usr/lib/python3/dist-packages/ragout/main.py
/usr/lib/python3/dist-packages/ragout/newick/__init__.py
/usr/lib/python3/dist-packages/ragout/newick/lexer.py
/usr/lib/python3/dist-packages/ragout/newick/parser.py
/usr/lib/python3/dist-packages/ragout/newick/tokens.py
/usr/lib/python3/dist-packages/ragout/newick/tree.py
/usr/lib/python3/dist-packages/ragout/overlap/__init__.py
/usr/lib/python3/dist-packages/ragout/overlap/overlap.py
/usr/lib/python3/dist-packages/ragout/parsers/__init__.py
/usr/lib/python3/dist-packages/ragout/parsers/fasta_parser.py
/usr/lib/python3/dist-packages/ragout/parsers/phylogeny_parser.py
/usr/lib/python3/dist-packages/ragout/parsers/recipe_parser.py
/usr/lib/python3/dist-packages/ragout/phylogeny/__init__.py
/usr/lib/python3/dist-packages/ragout/phylogeny/inferer.py
/usr/lib/python3/dist-packages/ragout/phylogeny/phylogeny.py
/usr/lib/python3/dist-packages/ragout/scaffolder/__init__.py
/usr/lib/python3/dist-packages/ragout/scaffolder/merge_iters.py
/usr/lib/python3/dist-packages/ragout/scaffolder/output_generator.py
/usr/lib/python3/dist-packages/ragout/scaffolder/scaffolder.py
/usr/lib/python3/dist-packages/ragout/shared/__init__.py
/usr/lib/python3/dist-packages/ragout/shared/config.py
/usr/lib/python3/dist-packages/ragout/shared/datatypes.py
/usr/lib/python3/dist-packages/ragout/shared/debug.py
/usr/lib/python3/dist-packages/ragout/shared/utils.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/__init__.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/cactus.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/hal.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/maf.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/sibelia.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/synteny_backend.py
/usr/lib/python3/dist-packages/ragout/tests/__init__.py
/usr/lib/python3/dist-packages/ragout/tests/data/DH1.fasta
/usr/lib/python3/dist-packages/ragout/tests/data/ecoli.rcp
/usr/lib/python3/dist-packages/ragout/tests/data/mg1655.coords
/usr/lib/python3/dist-packages/ragout/tests/data/mg1655_contigs.fasta
/usr/lib/python3/dist-packages/ragout/tests/test_toy.py
/usr/share/doc/ragout/changelog.Debian.gz
/usr/share/doc/ragout/copyright
/usr/share/man/man1/ragout-maf2synteny.1.gz
/usr/share/man/man1/ragout-overlap.1.gz
/usr/share/man/man1/ragout.1.gz