Пакет: crac (2.5.2+dfsg-6 и другие)

Ссылки для crac

Ресурсы Debian:

Исходный код crac:

Сопровождающие:

Внешние ресурсы:

Сайт [crac.gforge.inria.fr]

Подобные пакеты:

integrated RNA-Seq read analysis

CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis.

Другие пакеты, относящиеся к crac

зависимости

рекомендации

предложения

enhances

dep: libc6 (>= 2.34)

библиотека GNU C: динамически подключаемые библиотеки
также виртуальный пакет, предоставляемый libc6-udeb
dep: libgcc-s1 (>= 3.0)

вспомогательная библиотека GCC
dep: libgkarrays1t64 (>= 2.1.0+dfsg)

library to query large collection of NGS sequences
dep: libgzstream0 (>= 1.5+dfsg)

provide functionality of zlib C-library in a C++ iostream
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libjellyfish-2.0-2 (>= 2.3.1)

count k-mers in DNA sequences (dynamic library of jellyfish)
dep: libstdc++6 (>= 13.1)

стандартная библиотека GNU C++ версии 3
dep: zlib1g (>= 1:1.1.4)

библиотека сжатия

Загрузка crac

Загрузить для всех доступных архитектур
Архитектура	Версия	Размер пакета	В установленном виде	Файлы
ppc64el	2.5.2+dfsg-6+b1	480,3 Кб	2 436,0 Кб	[список файлов]