Пакет: r-bioc-saturn (1.10.0+dfsg-1)

Ссылки для r-bioc-saturn

Ресурсы Debian:

Исходный код r-bioc-saturn:

Сопровождающие:

Внешние ресурсы:

Сайт [bioconductor.org]

Подобные пакеты:

scalable analysis of differential transcript usage for RNA-sequencing

This Bioconductor package can be used for Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing.

Applications satuRn provides a higly performant and scalable framework for performing differential transcript usage analyses. The package consists of three main functions. The first function, fitDTU, fits quasi-binomial generalized linear models that model transcript usage in different groups of interest. The second function, testDTU, tests for differential usage of transcripts between groups of interest. Finally, plotDTU visualizes the usage profiles of transcripts in groups of interest.

Другие пакеты, относящиеся к r-bioc-saturn

зависимости

рекомендации

предложения

enhances

dep: r-api-4.0

виртуальный пакет, предоставляемый r-base-core
dep: r-api-bioc-3.18

виртуальный пакет, предоставляемый r-bioc-biocgenerics
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-limma

linear models for microarray data
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-cran-boot

GNU R package for bootstrapping functions from Davison and Hinkley
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-locfdr

GNU R computation of local false discovery rates
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-pbapply

GNU R package providing progress bars for vectorized R functions

sug: r-bioc-annotationhub

GNU R client to access AnnotationHub resources
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-delayedarray

BioConductor delayed operations on array-like objects
sug: r-bioc-dexseq

GNU R inference of differential exon usage in RNA-Seq
sug: r-bioc-edger

Empirical analysis of digital gene expression data in R
sug: r-bioc-ensembldb

GNU R utilities to create and use an Ensembl based annotation database
sug: r-cran-covr

test coverage for GNU R packages
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Загрузка r-bioc-saturn

Загрузить для всех доступных архитектур
Архитектура	Размер пакета	В установленном виде	Файлы
all	2 947,0 Кб	3 032,0 Кб	[список файлов]