Пакет: tnseq-transit (2.3.4-1)

Ссылки для tnseq-transit

Ресурсы Debian:

Исходный код tnseq-transit:

Сопровождающие:

Внешние ресурсы:

Сайт [saclab.tamu.edu]

Подобные пакеты:

statistical calculations of essentiality of genes or genomic regions

This is a software that can be used to analyze Tn-Seq datasets. It includes various statistical calculations of essentiality of genes or genomic regions (including conditional essentiality between 2 conditions). These methods were developed and tested as a collaboration between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)

TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1 or Tn5 datasets.

TRANSIT assumes you have already done pre-processing of raw sequencing files (.fastq) and extracted read counts into a .wig formatted file. The .wig file should contain the counts at all sites where an insertion could take place (including sites with no reads). For Himar1 datasets this is all TA sites in the genome. For Tn5 datasets this would be all nucleotides in the genome.

Другие пакеты, относящиеся к tnseq-transit

зависимости

рекомендации

предложения

enhances

dep: bwa

Burrows-Wheeler Aligner
dep: python

интерактивный объектно-ориентированный язык высокого уровня (ветка 2.x)
dep: python-matplotlib

Python based plotting system in a style similar to Matlab
dep: python-numpy

быстрые методы работы с числовыми массивами – модуль для языка Python
dep: python-pil

Python Imaging Library (Pillow fork)
dep: python-pkg-resources

обнаружение пакетов и доступ к ресурсам через pkg_resources
dep: python-scipy

scientific tools for Python
dep: python-wxgtk3.0

Python interface to the wxWidgets Cross-platform C++ GUI toolkit

Загрузка tnseq-transit

Загрузить для всех доступных архитектур
Архитектура	Размер пакета	В установленном виде	Файлы
amd64	5 915,6 Кб	35 976,0 Кб	[список файлов]