Пакет: r-bioc-tcgabiolinks (2.18.0+dfsg-1)

Ссылки для r-bioc-tcgabiolinks

Ресурсы Debian:

Исходный код r-bioc-tcgabiolinks:

Сопровождающие:

Внешние ресурсы:

Сайт [bioconductor.org]

Подобные пакеты:

GNU R/Bioconductor package for integrative analysis with GDC data

The aim of TCGAbiolinks is:

 1) facilitate the GDC open-access data retrieval,
 2) prepare the data using the appropriate pre-processing strategies,
 3) provide the means to carry out different standard analyses and
 4) to easily reproduce earlier research results.

In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

Другие пакеты, относящиеся к r-bioc-tcgabiolinks

зависимости

рекомендации

предложения

enhances

dep: r-api-4.0

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GNU R core of statistical computation and graphics system
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dep: r-bioc-s4vectors

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dep: r-bioc-summarizedexperiment (>= 1.4.0)

BioConductor assay container
dep: r-bioc-tcgabiolinksgui.data

Data for the TCGAbiolinksGUI package
dep: r-cran-data.table

GNU R extension of Data.frame
dep: r-cran-downloader (>= 0.4)

GNU R package for downloading files over http and https
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-httr (>= 1.2.1)

GNU R tools for working with URLs and HTTP
dep: r-cran-jsonlite (>= 1.0.0)

Robust, High Performance JSON Parser and Generator for R
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GNU R various programming utilities
dep: r-cran-readr

GNU R package to read rectangular text data
dep: r-cran-rvest (>= 0.3.0)

Easily Harvest (Scrape) Web Pages
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Make it easier to work with strings
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dep: r-cran-xml (>= 3.98.0)

GNU R package for XML parsing and generation
dep: r-cran-xml2

GNU R XML parser

rec: r-bioc-edaseq

GNU R exploratory data analysis and normalization for RNA-Seq
rec: r-bioc-edger

Empirical analysis of digital gene expression data in R
rec: r-cran-survminer

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rec: r-cran-testthat

GNU R testsuite

sug: r-bioc-affy

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base functions for Bioconductor
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standard styles for vignettes and other Bioconductor documents
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make complex heatmaps using GNU R
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sug: r-cran-ggrepel (>= 0.6.3)

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convert R markdown documents into a variety of formats
sug: r-cran-scales

Scale functions for visualization
sug: r-cran-survival

GNU R package for survival analysis

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