Пакет: r-bioc-rtracklayer (1.50.0-1)

Ссылки для r-bioc-rtracklayer

Ресурсы Debian:

Исходный код r-bioc-rtracklayer:

Сопровождающие:

Внешние ресурсы:

Сайт [bioconductor.org]

Подобные пакеты:

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Другие пакеты, относящиеся к r-bioc-rtracklayer

зависимости

рекомендации

предложения

enhances

dep: libc6 (>= 2.28)

библиотека GNU C: динамически подключаемые библиотеки
также виртуальный пакет, предоставляемый libc6-udeb
dep: r-api-4.0

виртуальный пакет, предоставляемый r-base-core
dep: r-api-bioc-3.12

виртуальный пакет, предоставляемый r-bioc-biocgenerics
dep: r-base-core (>= 4.0.3-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biocgenerics (>= 0.35.3)

generic functions for Bioconductor
dep: r-bioc-biostrings (>= 2.47.6)

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb (>= 1.15.2)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicalignments (>= 1.15.6)

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-genomicranges (>= 1.37.2)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.13.13)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rsamtools (>= 1.31.2)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-s4vectors (>= 0.23.18)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-xvector (>= 0.19.7)

BioConductor representation and manpulation of external sequences
dep: r-bioc-zlibbioc

(Virtual) zlibbioc Bioconductor package
dep: r-cran-rcurl (>= 1.4-2)

GNU R General network (HTTP/FTP/...) client interface
dep: r-cran-xml (>= 1.98-0)

GNU R package for XML parsing and generation
dep: zlib1g (>= 1:1.1.4)

библиотека сжатия

sug: r-bioc-bsgenome (>= 1.33.4)

BioConductor infrastructure for Biostrings-based genome data packages
sug: r-bioc-genefilter

methods for filtering genes from microarray experiments
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-limma

linear models for microarray data
sug: r-bioc-org.hs.eg.db

genome-wide annotation for Human
sug: r-cran-runit

GNU R package providing unit testing framework

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