Package: gubbins (2.3.4-1)

Links for gubbins

Debian Resources:

Download Source Package gubbins:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Andreas Tille (QA Page)
Aidan Delaney (QA Page)

External Resources:

Homepage [sanger-pathogens.github.io]

Similar packages:

phylogenetic analysis of genome sequences

Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.

Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.

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dep: libc6 (>= 2.4) [i386]
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dep: python3-reportlab

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dep: raxml (>= 8)

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dep: zlib1g (>= 1:1.1.4)

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Download gubbins

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Architecture	Package Size	Installed Size	Files
amd64	47.4 kB	187.0 kB	[list of files]
i386	48.3 kB	186.0 kB	[list of files]