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[ Source: r-bioc-pwalign  ]

Package: r-bioc-pwalign (1.0.0-2)

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Perform pairwise sequence alignments

The two main functions in the package are pairwiseAlignment() and stringDist(). The former solves (Needleman-Wunsch) global alignment, (Smith-Waterman) local alignment, and (ends-free) overlap alignment problems. The latter computes the Levenshtein edit distance or pairwise alignment score matrix for a set of strings.

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 736.2 kB1,142.0 kB [list of files]
amd64 737.3 kB1,103.0 kB [list of files]
arm64 735.8 kB1,143.0 kB [list of files]
mips64el 734.3 kB1,151.0 kB [list of files]
ppc64 (unofficial port) 739.3 kB1,207.0 kB [list of files]
ppc64el 737.8 kB1,143.0 kB [list of files]
riscv64 736.6 kB1,087.0 kB [list of files]
s390x 737.0 kB1,107.0 kB [list of files]
sparc64 (unofficial port) 732.3 kB2,039.0 kB [list of files]